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| PROCHECK - Stereochemical Quality of Protein Structures |
| ------------------------------------------------------- |
| and AQUA for PROCHECK-NMR |
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| CONFIDENTIALITY AGREEMENT |
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| In regard to the PROCHECK suite of programs, specified in Appendix 1 |
| herewith and the AQUA suite of programs specified in Appendix 2 herewith |
| (the Software) supplied to us, the copyright and other intellectual |
| property rights to which belong to the authors, we |
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| __________________________________________________________________ |
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| undertake to the authors that we shall be bound by the following terms and |
| conditions:- |
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| 1. We will receive the Software and any related documentation in confidence |
| and will not use the same except for the purpose of the department's own |
| research. The Software will be used only by such of our officers or |
| employees to whom it must reasonably be communicated to enable us to |
| undertake our research and who agree to be bound by the same confidence. |
| The department shall procure and enforce such agreement from its staff for |
| the benefit of the authors. |
| |
| 2. The publication of research using the Software must reference |
| |
| "Laskowski R A, MacArthur M W, Moss D S & Thornton J M (1993). PROCHECK: |
| a program to check the stereochemical quality of protein |
| structures. J. Appl. Cryst., 26, 283-291." |
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| and |
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| "Rullmann J A C (1996). AQUA, Computer Program, Department of NMR |
| Spectroscopy, Bijvoet Center for Biomolecular Research, Utrecht |
| University, The Netherlands." |
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| |
| 3. Research shall take place solely at the department's premises at |
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| __________________________________________________________________ |
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| 4. All forms of the Software will be kept in a reasonably secure place to |
| prevent unauthorised access. |
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| 5. Each copy of the Software or, if not practicable then, any package |
| associated therewith shall be suitably marked (and such marking maintained) |
| with the following copyright notice: " Copyright 1992 M W MacArthur, R A |
| Laskowski, D S Moss, J A C Rullmann & J M Thornton All Rights Reserved". |
| |
| 6. The Software may be modified but any changes made shall be made |
| available to the authors. |
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| 7. The Software shall be used exclusively for academic teaching and |
| research. The Software will not be used for any commercial research or |
| research associated with an industrial company. |
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| 8. The confidentiality obligation in paragraph one shall not apply: |
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| (i) to information and data known to the department at the time of |
| receipt hereunder (as evidenced by its written records); |
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| (ii) to information and data which was at the time of receipt in the |
| public domain or thereafter becomes so through no wrongful act of |
| the department; |
| |
| (iii) to information and data which the department receives from a third |
| party not in breach of any obligation of confidentiality owed to |
| the authors. |
| |
| |
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| Please sign this Undertaking and return a copy of it to indicate that you |
| have read, understood and accepted the above terms. |
| |
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| For and on behalf of _____________________________ |
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| _________________________________________________ |
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| .................................................. |
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| Dated ............................................ |
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| APPENDIX 1 - DETAILS OF THE PROCHECK SUITE OF PROGRAMS PROVIDED (v.3.4.3) |
| --------------------------------------------------------------- |
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| Files to be included |
| -------------------- |
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| 1. anglen.f } |
| 2. anglen.inc } |
| 3. bplot.f } |
| 4. bplot.inc } |
| 5. brkcln.par } |
| 6. clean.f } |
| 7. gfac2pdb.f } |
| 8. gfac2pdb.inc } |
| 9. mplot.f } |
| 10. mplot.inc } Source program files |
| 11. nb.c } |
| 12. pplot.f } |
| 13. pplot.inc } |
| 14. ps.f } |
| 15. rmsdev.f } |
| 16. rmsdev.inc } |
| 17. secstr.f } |
| 18. sstruc.par } |
| 19. tplot.f } |
| 20. tplot.inc } |
| 21. viol2pdb.f } |
| 22. viol2pdb.inc } |
| 23. vplot.f } |
| 24. vplot.inc } |
| 25. gfac2pdb.scr } |
| 26. procheck.com } |
| 27. procheck.scr } |
| 28. procheck_comp.com } |
| 29. procheck_comp.scr } |
| 30. procheck_nmr.scr } |
| 31. proplot.com } |
| 32. proplot.scr } Script files |
| 33. proplot_comp.scr } |
| 34. proplot_nmr.scr } |
| 35. proplot_comp.com } |
| 36. prosub.com } |
| 37. setup.com } |
| 38. setup.scr } |
| 39. viol2pdb.scr } |
| 40. convax.for } |
| 41. procomp.com } Installation files |
| 42. procomp.scr } |
| 43. maninst.ps } |
| 44. manual.tar.Z } Documentation files |
| 45. nmr_manual.tar.Z } |
| 46. procheck.dat } |
| 47. procheck.prm } Data |
| 48. procheck_comp.prm } files |
| 49. procheck_nmr.prm } |
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| APPENDIX 2 - DETAILS OF THE AQUA SUITE OF PROGRAMS PROVIDED (v.0.40) |
| ----------------------------------------------------------- |
| |
| Files to be included |
| -------------------- |
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| Source files:- |
| ------------ |
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| AquaCalc.c AquaCalc.h |
| AquaData.h |
| AquaDist.c AquaDist.h |
| AquaFiles.c AquaFiles.h |
| AquaFuncts.c AquaFuncts.h |
| AquaFuncts_biosym.c AquaFuncts_biosym.h |
| AquaFuncts_cv.c AquaFuncts_cv.h |
| AquaFuncts_io.c AquaFuncts_io.h |
| AquaFuncts_pdb.c AquaFuncts_pdb.h |
| AquaFuncts_pdbmr.c AquaFuncts_pdbmr.h |
| AquaHow.c AquaHow.h |
| AquaMacros.h |
| AquaPseudo.c AquaPseudo.h |
| AquaStrucset.c AquaStrucset.h |
| AquaTypes.h |
| AquaWhat.c AquaWhat.h |
| Qext.c Qext.h |
| Range.c Range.h |
| cv_subs.h |
| |
| Script files:- |
| ------------ |
| ReadNrv.pm* convDIANAtorsrestr qdbext* |
| aqdrst* convDISGEOdistrestr qguessc* |
| aqpc* convDISGEOtorsrestr qguessr* |
| aqpcsel convMRTABLE qhelp* |
| aquanal.pl* convXPLORdistrestr qmodr* |
| clean0* convXPLORtorsrestr qsplitr* |
| convBIOSYMdistrestr makecmm* qsumm* |
| convBIOSYMtorsrestr qconvert* qsumm_aux1* |
| convDIANAdistrestr qconvr* qsumm_aux2* |
| |
| Documentation:- |
| ------------- |
| README models.txt qconvr.txt |
| aqpc.txt mr.txt qdbext.txt |
| aqua_setup.txt names.txt qext.txt |
| biosym.txt overview.txt qhelp.txt |
| chains.txt perl.txt qsumm.txt |
| conversion.txt procheck.txt restraint_format.txt |
| dbas.txt qanal.txt setup.txt |
| intro.txt qclean.txt torsion.txt |
| log.txt qconvert.txt xplor.txt |
| |
| Extras:- |
| ------ |
| joinpdb* splitpdb* |
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| Please complete the above form, sign it, and then send or fax to:- |
| |
| |
| Roman Laskowski |
| European Bioinformatics Institute, |
| Wellcome Trust Genome Campus, |
| Hinxton, |
| Cambridge, CB10 1SD, |
| United Kingdom |
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| Fax:- +44 (0)1223 494 468 |
| |
| If you have any problems either installing the software or running it, |
| please e-mail your problems to:- |
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| roman@ebi.ac.uk |
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| Questions about AQUA should be directed to Ton Rullmann at |
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| rull@nmr.chem.ruu.nl |
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