Upgraded packages to latest upstream

Upgraded sys-process/lsof to v4.98.0

BUG=b/277108880
TEST=presubmit
RELEASE_NOTE=Upgraded sys-process/lsof to v4.98.0.

Change-Id: I1d0b76db63e241b6abbdbcadf7bfbc456bf467a3
Reviewed-on: https://cos-review.googlesource.com/c/third_party/overlays/portage-stable/+/46266
Tested-by: Cusky Presubmit Bot <presubmit@cos-infra-prod.iam.gserviceaccount.com>
Reviewed-by: Chenglong Tang <chenglongtang@google.com>
diff --git a/sys-process/lsof/Manifest b/sys-process/lsof/Manifest
index fbab9a3..448c9e9 100644
--- a/sys-process/lsof/Manifest
+++ b/sys-process/lsof/Manifest
@@ -1,3 +1,3 @@
-DIST lsof-4.95.0.tar.gz 1343380 BLAKE2B ffb0a656463f8f0e84ddcba36d78a94a8b4b883f0ff043c3821b3236274fb11e04b8c82f84f4e67ab922f021769c2711c1e97716aef3190d640fc321110521a3 SHA512 09c5c4b0ea0530e23b98b96df8485f37c2594028b604097a816aee216a8b1a7bc887071e8727cbaf3c765d0992314a5aa49723572cfe926f88806be18a6b8aef
 DIST lsof-4.96.3.tar.gz 1342843 BLAKE2B 79e276d0db5138c356cc8bfa32e6f991ce8860644eb5d02f49ba04ce08076232f0fb8b10e143ee135205de5c64bd053d7bf021e48d666b65ffc01c0a47b76116 SHA512 ad17a73590ffb154a13b8b5de8ada738ce343fcc833012b2a5e9b3bda587785b09ae8bf090a99fba8e84b788c2a6d61eaa7359f939bfa68d2423e604801e2a98
 DIST lsof-4.96.4.tar.gz 1342514 BLAKE2B c420e2f928ffa8148a62298ba7176f860b15f9e78f4c2dc299162614a1d9b94a85c42ee93ef5e92b8a99f1c67e496cf2c848874b844c22c287aab53bfe211c58 SHA512 06f8005e1eb72324c1fd603d8b8287a61ad6fdec182e9da833991a8915aaa69c416af1564d3b1087cb08b3504ef9b15cdffec7051605e89d945d6750ec8da985
+DIST lsof-4.98.0.tar.gz 734232 BLAKE2B 2f4ba4d179e8061e5bcff7dda4a0981616530bd5577fc73904e2699e6e982efee9e4270d3f2d3c68751d73cb98bfed0fd49d4c6bd967d15b4e06dcb72494d024 SHA512 6fde12497ce9cbba698be624b45e8392d551626c3e46b50ec23e661b322438ef7162dbac0d06829d56f074c7d934fa1ca98aa50ee1487125c93bebfe8eb2a2e8
diff --git a/sys-process/lsof/files/lsof-4.95.0-test-typo.patch b/sys-process/lsof/files/lsof-4.95.0-test-typo.patch
deleted file mode 100644
index f35b71e..0000000
--- a/sys-process/lsof/files/lsof-4.95.0-test-typo.patch
+++ /dev/null
@@ -1,25 +0,0 @@
-https://github.com/lsof-org/lsof/commit/60e292652879a45ecaa20987e755e218c1396311
-
-From 60e292652879a45ecaa20987e755e218c1396311 Mon Sep 17 00:00:00 2001
-From: Masatake YAMATO <yamato@redhat.com>
-Date: Thu, 28 Apr 2022 08:03:02 +0900
-Subject: [PATCH] [linux] test case: fix a typo
-
-Signed-off-by: Masatake YAMATO <yamato@redhat.com>
----
- dialects/linux/tests/case-10-ux-socket-state.bash | 2 +-
- 1 file changed, 1 insertion(+), 1 deletion(-)
-
-diff --git a/dialects/linux/tests/case-10-ux-socket-state.bash b/dialects/linux/tests/case-10-ux-socket-state.bash
-index 2c080d6..d58826e 100755
---- a/dialects/linux/tests/case-10-ux-socket-state.bash
-+++ b/dialects/linux/tests/case-10-ux-socket-state.bash
-@@ -4,7 +4,7 @@ name=$(basename $0 .bash)
- lsof=$1
- report=$2
- 
--if ! [ -r "/proc/$self/stack" ]; then
-+if ! [ -r "/proc/self/stack" ]; then
-     echo "this platform doesn't allow to access /proc/\$PID/stack" >> $report
-     exit 2
- fi
diff --git a/sys-process/lsof/lsof-4.96.4.ebuild b/sys-process/lsof/lsof-4.96.4.ebuild
deleted file mode 100644
index f5abb23..0000000
--- a/sys-process/lsof/lsof-4.96.4.ebuild
+++ /dev/null
@@ -1,116 +0,0 @@
-# Copyright 1999-2022 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=7
-
-inherit flag-o-matic toolchain-funcs
-
-MY_P="${P/-/_}"
-DESCRIPTION="Lists open files for running Unix processes"
-HOMEPAGE="https://github.com/lsof-org/lsof"
-SRC_URI="https://github.com/lsof-org/lsof/archive/${PV}.tar.gz -> ${P}.tar.gz"
-
-LICENSE="lsof"
-SLOT="0"
-KEYWORDS="*"
-IUSE="examples rpc selinux"
-
-RDEPEND="rpc? ( net-libs/libtirpc )
-	selinux? ( sys-libs/libselinux )"
-DEPEND="${RDEPEND}"
-BDEPEND="sys-apps/groff
-	rpc? ( virtual/pkgconfig )"
-
-# Needs fixing first
-RESTRICT="test"
-
-PATCHES=(
-	"${FILESDIR}"/${PN}-4.85-cross.patch # bug #432120
-)
-
-src_prepare() {
-	default
-
-	# Fix POSIX compliance with `echo`
-	sed -i \
-		-e 's:echo -n:printf:' \
-		AFSConfig Configure Customize Inventory tests/CkTestDB || die
-	# Convert `test -r header.h` into a compile test.
-	# Make sure we convert `test ... -a ...` into two `test` commands
-	# so we can then convert both over into a compile test. #601432
-	sed -i -E \
-		-e '/if test .* -a /s: -a : \&\& test :g' \
-		-e '/test -r/s:test -r \$\{LSOF_INCLUDE\}/([[:alnum:]/._]*):echo "#include <\1>" | ${LSOF_CC} ${LSOF_CFGF} -E - >/dev/null 2>\&1:g' \
-		-e 's:grep (.*) \$\{LSOF_INCLUDE\}/([[:alnum:]/._]*):echo "#include <\2>" | ${LSOF_CC} ${LSOF_CFGF} -E -P -dD - 2>/dev/null | grep \1:' \
-		Configure || die
-
-	# "create" man-page (bug #689462)
-	# inspired by shipped "makeman" ksh script
-	soelim < Lsof.8 > lsof.8 || die
-}
-
-target() {
-	case ${CHOST} in
-	*-darwin*)  echo darwin  ;;
-	*-freebsd*) echo freebsd ;;
-	*-solaris*) echo solaris ;;
-	*-aix*)     echo aixgcc  ;;
-	*)          echo linux   ;;
-	esac
-}
-
-src_configure() {
-	append-cppflags $(use rpc && $(tc-getPKG_CONFIG) libtirpc --cflags || echo "-DHASNOTRPC -DHASNORPC_H")
-
-	[[ ${CHOST} == *-solaris2.11 ]] && append-cppflags -DHAS_PAD_MUTEX
-
-	if [[ ${CHOST} == *-darwin* ]] ; then
-		# make sys/proc_info.h available in ${T} because of LSOF_INCLUDE
-		# dummy location -- Darwin needs this for a Configure check to
-		# succeed
-		if [[ -e /usr/include/sys/proc_info.h ]] ; then
-			mkdir -p "${T}"/sys || die
-			( cd "${T}"/sys && ln -s /usr/include/sys/proc_info.h ) || die
-		fi
-	fi
-
-	export LSOF_CFGL="${CFLAGS} ${LDFLAGS} \
-		$(use rpc && $(tc-getPKG_CONFIG) libtirpc --libs)"
-
-	# Set LSOF_INCLUDE to a dummy location so the script doesn't poke
-	# around in it and mix /usr/include paths with cross-compile/etc.
-	touch .neverInv
-	LINUX_HASSELINUX=$(usex selinux y n) \
-	LSOF_INCLUDE=${T} \
-	LSOF_CC=$(tc-getCC) \
-	LSOF_AR="$(tc-getAR) rc" \
-	LSOF_RANLIB=$(tc-getRANLIB) \
-	LSOF_CFGF="${CFLAGS} ${CPPFLAGS}" \
-	./Configure -n $(target) || die
-}
-
-src_compile() {
-	emake DEBUG="" all
-}
-
-src_install() {
-	dobin lsof
-
-	if use examples ; then
-		insinto /usr/share/lsof/scripts
-		doins scripts/*
-	fi
-
-	doman lsof.8
-	dodoc 00*
-}
-
-pkg_postinst() {
-	if [[ ${CHOST} == *-solaris* ]] ; then
-		einfo "Note: to use lsof on Solaris you need read permissions on"
-		einfo "/dev/kmem, i.e. you need to be root, or to be in the group sys"
-	elif [[ ${CHOST} == *-aix* ]] ; then
-		einfo "Note: to use lsof on AIX you need read permissions on /dev/mem and"
-		einfo "/dev/kmem, i.e. you need to be root, or to be in the group system"
-	fi
-}
diff --git a/sys-process/lsof/lsof-4.98.0.ebuild b/sys-process/lsof/lsof-4.98.0.ebuild
new file mode 100644
index 0000000..2f71948
--- /dev/null
+++ b/sys-process/lsof/lsof-4.98.0.ebuild
@@ -0,0 +1,55 @@
+# Copyright 1999-2023 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=7
+
+inherit flag-o-matic
+
+MY_P="${P/-/_}"
+DESCRIPTION="Lists open files for running Unix processes"
+HOMEPAGE="https://github.com/lsof-org/lsof"
+SRC_URI="https://github.com/lsof-org/lsof/releases/download/${PV}/${P}.tar.gz"
+
+LICENSE="lsof"
+SLOT="0"
+KEYWORDS="*"
+IUSE="rpc selinux"
+
+RDEPEND="
+	rpc? ( net-libs/libtirpc )
+	selinux? ( sys-libs/libselinux )
+"
+DEPEND="${RDEPEND}"
+BDEPEND="
+	sys-apps/groff
+	rpc? ( virtual/pkgconfig )
+"
+
+# Needs fixing first for sandbox
+RESTRICT="test"
+
+src_configure() {
+	export ac_cv_header_selinux_selinux_h=$(usex selinux)
+
+	[[ ${CHOST} == *-solaris2.11 ]] && append-cppflags -DHAS_PAD_MUTEX
+
+	local myeconfargs=(
+		$(use_with rpc libtirpc)
+	)
+
+	econf "${myeconfargs[@]}"
+}
+
+src_compile() {
+	emake DEBUG="" all
+}
+
+pkg_postinst() {
+	if [[ ${CHOST} == *-solaris* ]] ; then
+		einfo "Note: to use lsof on Solaris you need read permissions on"
+		einfo "/dev/kmem, i.e. you need to be root, or to be in the group sys"
+	elif [[ ${CHOST} == *-aix* ]] ; then
+		einfo "Note: to use lsof on AIX you need read permissions on /dev/mem and"
+		einfo "/dev/kmem, i.e. you need to be root, or to be in the group system"
+	fi
+}