Upgraded packages to latest upstream

Upgraded app-admin/sudo to v1.9.13_p3-r1

BUG=b/281799576
TEST=presubmit
RELEASE_NOTE=Upgraded app-admin/sudo to v1.9.13_p3-r1.

Change-Id: I2ae74fa280aa76cdfb6e77b2aec7e75ab4218647
Reviewed-on: https://cos-review.googlesource.com/c/third_party/overlays/portage-stable/+/49192
Reviewed-by: Robert Kolchmeyer <rkolchmeyer@google.com>
Tested-by: Cusky Presubmit Bot <presubmit@cos-infra-prod.iam.gserviceaccount.com>
diff --git a/app-admin/sudo/files/sudo-1.9.13_p3-configure-clang16.patch b/app-admin/sudo/files/sudo-1.9.13_p3-configure-clang16.patch
new file mode 100644
index 0000000..a9b9434
--- /dev/null
+++ b/app-admin/sudo/files/sudo-1.9.13_p3-configure-clang16.patch
@@ -0,0 +1,105 @@
+ttps://www.sudo.ws/pipermail/sudo-workers/2023-April/001387.html
+https://github.com/sudo-project/sudo/commit/b83140e0f18fb27d310a4839a14f5c3febd2770b
+https://github.com/sudo-project/sudo/commit/075ee0f9dc234f9a7e680b16304809e5546965d5
+
+From b83140e0f18fb27d310a4839a14f5c3febd2770b Mon Sep 17 00:00:00 2001
+From: "Todd C. Miller" <Todd.Miller@sudo.ws>
+Date: Wed, 26 Apr 2023 11:10:46 -0600
+Subject: [PATCH] Use ldap_msgfree() instead of ldap_init() for the lber.h
+ test. The ldap_init() function is marked as deprecated and not defined by
+ default on some systems.  This can cause an error for compilers that do not
+ support implicit function declarations. From Florian Weimer.
+
+--- a/configure
++++ b/configure
+@@ -31515,7 +31515,7 @@ else case e in #(
+ int
+ main (void)
+ {
+-(void)ldap_init(0, 0)
++return ldap_msgfree(NULL)
+   ;
+   return 0;
+ }
+--- a/m4/ldap.m4
++++ b/m4/ldap.m4
+@@ -52,7 +52,7 @@ AC_DEFUN([SUDO_CHECK_LDAP], [
+ #include <lber.h>])
+ 	AC_CACHE_CHECK([whether lber.h is needed when including ldap.h], [sudo_cv_header_lber_h], [
+ 	    AC_LINK_IFELSE([AC_LANG_PROGRAM([[#include <sys/types.h>
+-#include <ldap.h>]], [[(void)ldap_init(0, 0)]])], [
++#include <ldap.h>]], [[return ldap_msgfree(NULL)]])], [
+ 		# No need to explicitly include lber.h when including ldap.h.
+ 		sudo_cv_header_lber_h=no
+ 	    ], [
+
+From 075ee0f9dc234f9a7e680b16304809e5546965d5 Mon Sep 17 00:00:00 2001
+From: "Todd C. Miller" <Todd.Miller@sudo.ws>
+Date: Wed, 26 Apr 2023 12:44:10 -0600
+Subject: [PATCH] Add missing stdio.h include for the _FORTIFY_SOURCE=2 check.
+ Implementations of _FORTIFY_SOURCE require the header file to be included. 
+ Also remove the useless test of an empty program with _FORTIFY_SOURCE
+ defined.  Pointed out by Florian Weimer.
+
+--- a/configure
++++ b/configure
+@@ -34207,33 +34207,11 @@ else case e in #(
+   e) cat confdefs.h - <<_ACEOF >conftest.$ac_ext
+ /* end confdefs.h.  */
+ 
+-
+-int
+-main (void)
+-{
+-char buf[4]; (void)sprintf(buf, "%s", "foo");
+-
+-  ;
+-  return 0;
+-}
+-_ACEOF
+-if ac_fn_c_try_link "$LINENO"
+-then :
+-  sudo_cv_use_fortify_source=yes
+-else case e in #(
+-  e) sudo_cv_use_fortify_source=no
+-		 ;;
+-esac
+-fi
+-rm -f core conftest.err conftest.$ac_objext conftest.beam \
+-    conftest$ac_exeext conftest.$ac_ext
+-
+-	    cat confdefs.h - <<_ACEOF >conftest.$ac_ext
+-/* end confdefs.h.  */
+-
++		    #include <stdio.h>
+ int
+ main (void)
+ {
++char buf[4]; sprintf(buf, "%s", "foo"); return buf[0];
+ 
+   ;
+   return 0;
+--- a/m4/hardening.m4
++++ b/m4/hardening.m4
+@@ -10,18 +10,13 @@ AC_DEFUN([SUDO_CHECK_HARDENING], [
+ 	    [sudo_cv_use_fortify_source],
+ 	    [AC_LINK_IFELSE([
+ 		    AC_LANG_PROGRAM(
+-			[[]], [[char buf[4]; (void)sprintf(buf, "%s", "foo");]]
++			[[#include <stdio.h>]],
++			[[char buf[4]; sprintf(buf, "%s", "foo"); return buf[0];]]
+ 		    )],
+ 		    [sudo_cv_use_fortify_source=yes],
+ 		    [sudo_cv_use_fortify_source=no]
+ 		)
+ 	    ]
+-	    [AC_LINK_IFELSE(
+-		[AC_LANG_PROGRAM([[]], [[]])],
+-		    [sudo_cv_use_fortify_source=yes],
+-		    [sudo_cv_use_fortify_source=no]
+-		)
+-	    ]
+ 	)
+ 	if test "$sudo_cv_use_fortify_source" != yes; then
+ 	    CPPFLAGS="$O_CPPFLAGS"
+
diff --git a/app-admin/sudo/sudo-1.9.13_p3.ebuild b/app-admin/sudo/sudo-1.9.13_p3-r1.ebuild
similarity index 98%
rename from app-admin/sudo/sudo-1.9.13_p3.ebuild
rename to app-admin/sudo/sudo-1.9.13_p3-r1.ebuild
index 7a40655..cbc86bc 100644
--- a/app-admin/sudo/sudo-1.9.13_p3.ebuild
+++ b/app-admin/sudo/sudo-1.9.13_p3-r1.ebuild
@@ -86,6 +86,10 @@
 
 MAKEOPTS+=" SAMPLES="
 
+PATCHES=(
+	"${FILESDIR}"/${PN}-1.9.13_p3-configure-clang16.patch
+)
+
 src_prepare() {
 	default